Physician & Neuroimaging Researcher

I build reproducible neuroimaging workflows across structural MRI, task and resting-state fMRI, diffusion MRI, MEG, EEG, and PET.

My work emphasizes transparent processing, quality control, cross-software validation, open science, and technically documented analysis pipelines.

Reproducible single-subject diffusion MRI workflow using public MPI-LEMON data.

• MP-PCA denoising and Gibbs-ringing correction
• Motion, eddy-current, and outlier correction with FSL Eddy
• Diffusion tensor fitting with FA, MD, AD, and RD maps
• Single-shell constrained spherical deconvolution
• Probabilistic iFOD2 whole-brain tractography
• SIFT filtering and track-density imaging
• Automated quality-control figures and quantitative summaries

Open the diffusion MRI project

Single-subject analysis of the classic SPM Auditory dataset, implemented independently in SPM25 and FSL FEAT.

• Contrast: Listening > Rest
• Motion quality control
• First-level GLM
• Statistical maps and cluster tables
• Cross-software comparison
• DOI: 10.5281/zenodo.17715106

Reproduction of the Brainstorm median-nerve workflow.

• Sensor-level event-related fields
• Early somatosensory topography at approximately 20 ms
• Minimum-norm dSPM source reconstruction
• Morlet time-frequency analysis from 4 to 80 Hz
• DOI: 10.5281/zenodo.17715113

Single-subject T1-weighted structural MRI workflow.

• Bias-field correction
• Grey matter, white matter, and CSF segmentation
• Spatial normalization and modulation
• CAT quality-control assessment
• Global tissue-volume extraction
• Preparation of smoothed grey matter for VBM

Single-subject cortical reconstruction and morphometry using OpenNeuro ds000114.

• Complete recon-all cortical reconstruction
• Subcortical and global volumetric statistics
• Cortical thickness, area, and volume by Desikan–Killiany region
• Coronal, sagittal, and axial Freeview quality-control figures
• Reproducible Ubuntu workflow with FreeSurfer 7.4.1

Open the FreeSurfer project

• Resting-state functional connectivity and graph analysis

These repositories are listed as work in progress until their analyses, documentation, and final outputs are complete.

Neuroimaging

SPM · FSL/FEAT · FreeSurfer · CAT · Brainstorm · MRtrix3 · BRAPH · EEGLAB · FieldTrip

Programming and reproducibility

Python · MATLAB · Bash · Git · BIDS · statistical modelling · scientific visualization

• Structural and functional brain connectivity
• Diffusion MRI and tractography
• Reproducible neuroimaging
• Multimodal integration
• Neuroimaging quality control
• Source imaging
• Graph-theoretical analysis
• Clinical and translational neuroscience

• ORCID: 0000-0001-5627-579X
• Google Scholar
• LinkedIn

Raw neuroimaging data are generally excluded from the repositories. Each completed project documents its data source, processing decisions, software environment, outputs, and limitations.